IL_4V97_188

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CAUCAG*CGACGACG

Length

14 nucleotides

Bulged bases

4V97|1|CA|U|244, 4V97|1|CA|C|280

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_188 not in the Motif Atlas

Homologous match to IL_4LFB_011

Geometric discrepancy: 0.0943

The information below is about IL_4LFB_011

Detailed Annotation

Kink-turn with non-sequential stacking

Broad Annotation

Kink-turn

Motif group

IL_46174.4

Basepair signature

cWW-cSS-tSS-tSH-L-cWW-tHW-cWW

Number of instances in this motif group

6

Unit IDs

4V97|1|CA|C|242
4V97|1|CA|A|243
4V97|1|CA|U|244
4V97|1|CA|C|245
4V97|1|CA|A|246
4V97|1|CA|G|247
*
4V97|1|CA|C|277
4V97|1|CA|G|278
4V97|1|CA|A|279
4V97|1|CA|C|280
4V97|1|CA|G|281
4V97|1|CA|A|282
4V97|1|CA|C|283
4V97|1|CA|G|284

Current chains

Chain CA

16S rRNA

Nearby chains

Chain CL

30S ribosomal protein S12

Chain CQ

30S ribosomal protein S17