IL_4V97_238

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCC*GGC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_238 not in the Motif Atlas

Geometric match to IL_4LFB_061

Geometric discrepancy: 0.1966

The information below is about IL_4LFB_061

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

Isolated non-canonical cWW pair

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V97|1|CW|G|1
4V97|1|CW|C|2
4V97|1|CW|C|3
*
4V97|1|CW|G|70
4V97|1|CW|G|71
4V97|1|CW|C|72

Current chains

Chain CW

E-SITE TRNA PHE OR A-SITE tRNA Phe

Nearby chains

Chain D1

50S RIBOSOMAL PROTEIN L28

Chain DA

Large subunit ribosomal RNA; LSU rRNA