IL_4V97_239

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CCGGA*UCCGG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCGGA,UCCGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_239 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3901

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V97|1|CW|C|3
4V97|1|CW|C|4
4V97|1|CW|G|5
4V97|1|CW|G|6
4V97|1|CW|A|7
*
4V97|1|CW|U|66
4V97|1|CW|C|67
4V97|1|CW|C|68
4V97|1|CW|G|69
4V97|1|CW|G|70

Current chains

Chain CW

E-SITE TRNA PHE OR A-SITE tRNA Phe

Nearby chains

Chain D6

50S RIBOSOMAL PROTEIN L33

Chain DA

Large subunit ribosomal RNA; LSU rRNA