IL_4V97_255

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GAAC*GAGUGAAAUAGAGC

Length

18 nucleotides

Bulged bases

4V97|1|DA|U|504, 4V97|1|DA|G|508

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_255 not in the Motif Atlas

Homologous match to IL_7RQB_014

Geometric discrepancy: 0.0712

The information below is about IL_7RQB_014

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_60992.6

Basepair signature

cWW-cWS-tSH-L-tHH-tWH-cWW-tSS-tSH-L-L

Number of instances in this motif group

6

Unit IDs

4V97|1|DA|G|481
4V97|1|DA|A|482
4V97|1|DA|A|483
4V97|1|DA|C|484
*
4V97|1|DA|G|496
4V97|1|DA|A|497
4V97|1|DA|G|498
4V97|1|DA|U|499
4V97|1|DA|G|500
4V97|1|DA|A|501
4V97|1|DA|A|502
4V97|1|DA|A|503
4V97|1|DA|U|504
4V97|1|DA|A|505
4V97|1|DA|G|506
4V97|1|DA|A|507
4V97|1|DA|G|508
4V97|1|DA|C|509

Current chains

Chain DA

23S rRNA

Nearby chains

Chain DW

50S RIBOSOMAL PROTEIN L22

Chain DY

50S RIBOSOMAL PROTEIN L24