IL_4V97_314

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

CGAAAUUCCUUG*CCUG

Length

16 nucleotides

Bulged bases

4V97|1|DA|A|1938, 4V97|1|DA|U|1944, 4V97|1|DA|U|1963

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_314 not in the Motif Atlas

Geometric match to IL_4WF9_077

Geometric discrepancy: 0.1171

The information below is about IL_4WF9_077

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_42218.2

Basepair signature

cWW-L-R-cHW-cWW-L-L-L-R-L

Number of instances in this motif group

5

Unit IDs

4V97|1|DA|C|1934
4V97|1|DA|G|1935
4V97|1|DA|A|1936
4V97|1|DA|A|1937
4V97|1|DA|A|1938
4V97|1|DA|U|1939
4V97|1|DA|U|1940
4V97|1|DA|C|1941
4V97|1|DA|C|1942
4V97|1|DA|U|1943
4V97|1|DA|U|1944
4V97|1|DA|G|1945
*
4V97|1|DA|C|1961
4V97|1|DA|C|1962
4V97|1|DA|U|1963
4V97|1|DA|G|1964

Current chains

Chain DA

23S rRNA

Nearby chains

Chain CA

Small subunit ribosomal RNA; SSU rRNA

Chain DD

50S RIBOSOMAL PROTEIN L2