IL_4V97_323

3D structure

PDB id

4V97 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal structure of the bacterial ribosome ram mutation G299A.

Experimental method

X-RAY DIFFRACTION

Resolution

3.52 Å

Loop

Sequence

GCGUAGGAUAG*CC

Length

13 nucleotides

Bulged bases

4V97|1|DA|G|2116

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V97_323 not in the Motif Atlas

Geometric match to IL_1MZP_002

Geometric discrepancy: 0.2655

The information below is about IL_1MZP_002

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_32056.1

Basepair signature

cWW-L-cWW-L-L-tWH-R-L-R-L

Number of instances in this motif group

3

Unit IDs

4V97|1|DA|G|2110
4V97|1|DA|C|2111
4V97|1|DA|G|2112
4V97|1|DA|U|2113
4V97|1|DA|A|2114
4V97|1|DA|G|2115
4V97|1|DA|G|2116
4V97|1|DA|A|2117
4V97|1|DA|U|2118
4V97|1|DA|A|2119
4V97|1|DA|G|2120
*
4V97|1|DA|C|2178
4V97|1|DA|C|2179

Current chains

Chain DA

23S rRNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CW

Transfer RNA; tRNA

Chain DC

50S RIBOSOMAL PROTEIN L1