IL_4V9A_018

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAAGAAG*UGUAAAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_018 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1437

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9A|1|AA|G|409
4V9A|1|AA|G|410
4V9A|1|AA|A|411
4V9A|1|AA|A|412
4V9A|1|AA|G|413
4V9A|1|AA|A|414
4V9A|1|AA|A|415
4V9A|1|AA|G|416
*
4V9A|1|AA|U|427
4V9A|1|AA|G|428
4V9A|1|AA|U|429
4V9A|1|AA|A|430
4V9A|1|AA|A|431
4V9A|1|AA|A|432
4V9A|1|AA|C|433

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AG

30S RIBOSOMAL PROTEIN S4