IL_4V9A_020

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GAAACCC*GGACUGAC

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_020 not in the Motif Atlas

Geometric match to IL_6CZR_131

Geometric discrepancy: 0.1924

The information below is about IL_6CZR_131

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_30149.1

Basepair signature

cWW-L-R-L-R-tWH-L-R-L-R-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9A|1|AA|G|450
4V9A|1|AA|A|451
4V9A|1|AA|A|452
4V9A|1|AA|A|453
4V9A|1|AA|C|454
4V9A|1|AA|C|455
4V9A|1|AA|C|456
*
4V9A|1|AA|G|476
4V9A|1|AA|G|477
4V9A|1|AA|A|478
4V9A|1|AA|C|479
4V9A|1|AA|U|480
4V9A|1|AA|G|481
4V9A|1|AA|A|482
4V9A|1|AA|C|483

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AS

30S RIBOSOMAL PROTEIN S16