IL_4V9A_139
3D structure
- PDB id
- 4V9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tetracycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- UCAAG*CGAAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9A_139 not in the Motif Atlas
- Homologous match to IL_4WF9_073
- Geometric discrepancy: 0.1717
- The information below is about IL_4WF9_073
- Detailed Annotation
- UAA/GAN with extra stack
- Broad Annotation
- No text annotation
- Motif group
- IL_89021.2
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V9A|1|BA|U|1851
4V9A|1|BA|C|1852
4V9A|1|BA|A|1853
4V9A|1|BA|A|1854
4V9A|1|BA|G|1855
*
4V9A|1|BA|C|1887
4V9A|1|BA|G|1888
4V9A|1|BA|A|1889
4V9A|1|BA|A|1890
4V9A|1|BA|G|1891
Current chains
- Chain BA
- 23S ribosomal RNA
Nearby chains
- Chain BD
- 50S ribosomal protein L2
Coloring options: