IL_4V9A_200

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGA*UCC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGA,UCC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_200 not in the Motif Atlas

Geometric match to IL_2H1M_003

Geometric discrepancy: 0.2409

The information below is about IL_2H1M_003

Detailed Annotation

Isolated cWH basepair

Broad Annotation

Isolated cWH basepair

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V9A|1|CA|G|406
4V9A|1|CA|G|407
4V9A|1|CA|A|408
*
4V9A|1|CA|U|434
4V9A|1|CA|C|435
4V9A|1|CA|C|436

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S RIBOSOMAL PROTEIN S4