IL_4V9A_228
3D structure
- PDB id
- 4V9A (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tetracycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.3 Å
Loop
- Sequence
- CG*CUG
- Length
- 5 nucleotides
- Bulged bases
- 4V9A|1|CA|U|1196
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9A_228 not in the Motif Atlas
- Geometric match to IL_4LFB_046
- Geometric discrepancy: 0.2037
- The information below is about IL_4LFB_046
- Detailed Annotation
- Single bulged U
- Broad Annotation
- No text annotation
- Motif group
- IL_89505.4
- Basepair signature
- cWW-L-cWW
- Number of instances in this motif group
- 117
Unit IDs
4V9A|1|CA|C|1060
4V9A|1|CA|G|1061
*
4V9A|1|CA|C|1195
4V9A|1|CA|U|1196
4V9A|1|CA|G|1197
Current chains
- Chain CA
- 16S ribosomal RNA
Nearby chains
- Chain CF
- 30S RIBOSOMAL PROTEIN S3
- Chain CH
- 30S RIBOSOMAL PROTEIN S5
- Chain CL
- 30S RIBOSOMAL PROTEIN S9
- Chain CM
- 30S RIBOSOMAL PROTEIN S10
- Chain CQ
- 30S RIBOSOMAL PROTEIN S14
Coloring options: