IL_4V9A_290

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAAGACAG*UCGAG

Length

14 nucleotides

Bulged bases

4V9A|1|DA|A|1046

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_290 not in the Motif Atlas

Homologous match to IL_7RQB_042

Geometric discrepancy: 0.2895

The information below is about IL_7RQB_042

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_90538.4

Basepair signature

cWW-tSS-tSH-L-tHS-R-cWW-L-L

Number of instances in this motif group

6

Unit IDs

4V9A|1|DA|C|1043
4V9A|1|DA|G|1044
4V9A|1|DA|A|1045
4V9A|1|DA|A|1046
4V9A|1|DA|G|1047
4V9A|1|DA|A|1048
4V9A|1|DA|C|1049
4V9A|1|DA|A|1050
4V9A|1|DA|G|1051
*
4V9A|1|DA|U|1108
4V9A|1|DA|C|1109
4V9A|1|DA|G|1110
4V9A|1|DA|A|1111
4V9A|1|DA|G|1112

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DH

50S ribosomal protein L6