IL_4V9A_333

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUCG*CGGC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_333 not in the Motif Atlas

Geometric match to IL_3NDB_001

Geometric discrepancy: 0.3457

The information below is about IL_3NDB_001

Detailed Annotation

Self complementary

Broad Annotation

Self complementary

Motif group

IL_30621.4

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

66

Unit IDs

4V9A|1|DA|G|2101
4V9A|1|DA|U|2102
4V9A|1|DA|C|2103
4V9A|1|DA|G|2104
*
4V9A|1|DA|C|2185
4V9A|1|DA|G|2186
4V9A|1|DA|G|2187
4V9A|1|DA|C|2188

Current chains

Chain DA

23S ribosomal RNA

Nearby chains