IL_4V9A_360

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCC*GGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CCC,GGG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_360 not in the Motif Atlas

Homologous match to IL_4WF9_121

Geometric discrepancy: 0.334

The information below is about IL_4WF9_121

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.6

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

51

Unit IDs

4V9A|1|DB|C|2
4V9A|1|DB|C|3
4V9A|1|DB|C|4
*
4V9A|1|DB|G|116
4V9A|1|DB|G|117
4V9A|1|DB|G|118

Current chains

Chain DB

5S RIBOSOMAL RNA

Nearby chains

Chain DQ

50S ribosomal protein L18