IL_4V9A_391

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGGG*CCUACC

Length

11 nucleotides

Bulged bases

4V9A|1|DA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_391 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5206

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9A|1|DA|G|879
4V9A|1|DA|G|880
4V9A|1|DA|G|881
4V9A|1|DA|G|882
4V9A|1|DA|G|883
*
4V9A|1|DA|C|893
4V9A|1|DA|C|894
4V9A|1|DA|U|895
4V9A|1|DA|A|896
4V9A|1|DA|C|897
4V9A|1|DA|C|898

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25