IL_4V9A_396

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGAACUCUG*CUGUC

Length

14 nucleotides

Bulged bases

4V9A|1|DA|G|1992

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_396 not in the Motif Atlas

Homologous match to IL_9DFE_066

Geometric discrepancy: 0.0685

The information below is about IL_9DFE_066

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_80252.1

Basepair signature

cWW-tSH-cWW-tHW-R-L-cWW-L-L-R

Number of instances in this motif group

10

Unit IDs

4V9A|1|DA|G|1666
4V9A|1|DA|G|1667
4V9A|1|DA|A|1668
4V9A|1|DA|A|1669
4V9A|1|DA|C|1670
4V9A|1|DA|U|1671
4V9A|1|DA|C|1672
4V9A|1|DA|U|1673
4V9A|1|DA|G|1674
*
4V9A|1|DA|C|1990
4V9A|1|DA|U|1991
4V9A|1|DA|G|1992
4V9A|1|DA|U|1993
4V9A|1|DA|C|1994

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DE

50S ribosomal protein L3

Chain DN

50S ribosomal protein L14