IL_4V9A_398

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GCCUGCGUAGGAUAGGUGGGAGCCUGUGAACCCCCGC*GUGGGGGGGAGGCGCCGGUGAAAUACCACCCUGGC

Length

72 nucleotides

Bulged bases

4V9A|1|DA|C|2111, 4V9A|1|DA|U|2118, 4V9A|1|DA|A|2126, 4V9A|1|DA|U|2132, 4V9A|1|DA|G|2166, 4V9A|1|DA|U|2167

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

4V9A|1|DA|G|2106
4V9A|1|DA|C|2107
4V9A|1|DA|C|2108
4V9A|1|DA|U|2109
4V9A|1|DA|G|2110
4V9A|1|DA|C|2111
4V9A|1|DA|G|2112
4V9A|1|DA|U|2113
4V9A|1|DA|A|2114
4V9A|1|DA|G|2115
4V9A|1|DA|G|2116
4V9A|1|DA|A|2117
4V9A|1|DA|U|2118
4V9A|1|DA|A|2119
4V9A|1|DA|G|2120
4V9A|1|DA|G|2121
4V9A|1|DA|U|2122
4V9A|1|DA|G|2123
4V9A|1|DA|G|2124
4V9A|1|DA|G|2125
4V9A|1|DA|A|2126
4V9A|1|DA|G|2127
4V9A|1|DA|C|2128
4V9A|1|DA|C|2129
4V9A|1|DA|U|2130
4V9A|1|DA|G|2131
4V9A|1|DA|U|2132
4V9A|1|DA|G|2133
4V9A|1|DA|A|2134
4V9A|1|DA|A|2135
4V9A|1|DA|C|2136
4V9A|1|DA|C|2137
4V9A|1|DA|C|2138
4V9A|1|DA|C|2139
4V9A|1|DA|C|2140
4V9A|1|DA|G|2141
4V9A|1|DA|C|2142
*
4V9A|1|DA|G|2149
4V9A|1|DA|U|2150
4V9A|1|DA|G|2151
4V9A|1|DA|G|2152
4V9A|1|DA|G|2153
4V9A|1|DA|G|2154
4V9A|1|DA|G|2155
4V9A|1|DA|G|2156
4V9A|1|DA|G|2157
4V9A|1|DA|A|2158
4V9A|1|DA|G|2159
4V9A|1|DA|G|2160
4V9A|1|DA|C|2161
4V9A|1|DA|G|2162
4V9A|1|DA|C|2163
4V9A|1|DA|C|2164
4V9A|1|DA|G|2165
4V9A|1|DA|G|2166
4V9A|1|DA|U|2167
4V9A|1|DA|G|2168
4V9A|1|DA|A|2169
4V9A|1|DA|A|2170
4V9A|1|DA|A|2171
4V9A|1|DA|U|2172
4V9A|1|DA|A|2173
4V9A|1|DA|C|2174
4V9A|1|DA|C|2175
4V9A|1|DA|A|2176
4V9A|1|DA|C|2177
4V9A|1|DA|C|2178
4V9A|1|DA|C|2179
4V9A|1|DA|U|2180
4V9A|1|DA|G|2181
4V9A|1|DA|G|2182
4V9A|1|DA|C|2183

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AA

Small subunit ribosomal RNA; SSU rRNA

Chain CN

30S RIBOSOMAL PROTEIN S11