IL_4V9A_411

3D structure

PDB id

4V9A (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tetracycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UCC*GG

Length

5 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9A_411 not in the Motif Atlas

Geometric match to IL_8P9A_267

Geometric discrepancy: 0.3461

The information below is about IL_8P9A_267

Detailed Annotation

Minor groove platform

Broad Annotation

No text annotation

Motif group

IL_34520.3

Basepair signature

cWW-cSH-cWW

Number of instances in this motif group

61

Unit IDs

4V9A|1|DA|U|2401
4V9A|1|DA|C|2402
4V9A|1|DA|C|2403
*
4V9A|1|DA|G|2414
4V9A|1|DA|G|2415

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D6

50S ribosomal protein L33

Chain D8

50S ribosomal protein L35

Chain DO

50S ribosomal protein L15

Chain DZ

50S ribosomal protein L28