3D structure

PDB id
4V9B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 70S ribosome with tigecycline.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
CAUCAG*CGACGACG
Length
14 nucleotides
Bulged bases
4V9B|1|AA|U|244, 4V9B|1|AA|C|280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9B_012 not in the Motif Atlas
Homologous match to IL_6CZR_123
Geometric discrepancy: 0.0877
The information below is about IL_6CZR_123
Detailed Annotation
Kink-turn with non-sequential stacking
Broad Annotation
Kink-turn
Motif group
IL_46174.2
Basepair signature
cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
Number of instances in this motif group
6

Unit IDs

4V9B|1|AA|C|242
4V9B|1|AA|A|243
4V9B|1|AA|U|244
4V9B|1|AA|C|245
4V9B|1|AA|A|246
4V9B|1|AA|G|247
*
4V9B|1|AA|C|277
4V9B|1|AA|G|278
4V9B|1|AA|A|279
4V9B|1|AA|C|280
4V9B|1|AA|G|281
4V9B|1|AA|A|282
4V9B|1|AA|C|283
4V9B|1|AA|G|284

Current chains

Chain AA
16S ribosomal RNA

Nearby chains

Chain AO
30S RIBOSOMAL PROTEIN S12
Chain AT
30S RIBOSOMAL PROTEIN S17

Coloring options:


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