IL_4V9B_012
3D structure
- PDB id
- 4V9B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tigecycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- CAUCAG*CGACGACG
- Length
- 14 nucleotides
- Bulged bases
- 4V9B|1|AA|U|244, 4V9B|1|AA|C|280
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9B_012 not in the Motif Atlas
- Homologous match to IL_6CZR_123
- Geometric discrepancy: 0.0877
- The information below is about IL_6CZR_123
- Detailed Annotation
- Kink-turn with non-sequential stacking
- Broad Annotation
- Kink-turn
- Motif group
- IL_46174.2
- Basepair signature
- cWW-cSS-tSS-tSH-L-cWW-tHW-cWW
- Number of instances in this motif group
- 6
Unit IDs
4V9B|1|AA|C|242
4V9B|1|AA|A|243
4V9B|1|AA|U|244
4V9B|1|AA|C|245
4V9B|1|AA|A|246
4V9B|1|AA|G|247
*
4V9B|1|AA|C|277
4V9B|1|AA|G|278
4V9B|1|AA|A|279
4V9B|1|AA|C|280
4V9B|1|AA|G|281
4V9B|1|AA|A|282
4V9B|1|AA|C|283
4V9B|1|AA|G|284
Current chains
- Chain AA
- 16S ribosomal RNA
Nearby chains
- Chain AO
- 30S RIBOSOMAL PROTEIN S12
- Chain AT
- 30S RIBOSOMAL PROTEIN S17
Coloring options: