IL_4V9B_218

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAAC*GGUAG

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_218 not in the Motif Atlas

Homologous match to IL_6CZR_145

Geometric discrepancy: 0.0966

The information below is about IL_6CZR_145

Detailed Annotation

tSH-tHW-tHS

Broad Annotation

No text annotation

Motif group

IL_17136.6

Basepair signature

cWW-tSH-tHW-tHS-cWW

Number of instances in this motif group

16

Unit IDs

4V9B|1|CA|C|779
4V9B|1|CA|A|780
4V9B|1|CA|A|781
4V9B|1|CA|A|782
4V9B|1|CA|C|783
*
4V9B|1|CA|G|799
4V9B|1|CA|G|800
4V9B|1|CA|U|801
4V9B|1|CA|A|802
4V9B|1|CA|G|803

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CN

30S RIBOSOMAL PROTEIN S11

Chain DA

Large subunit ribosomal RNA; LSU rRNA