IL_4V9B_224

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAG*CUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAG,CUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_224 not in the Motif Atlas

Geometric match to IL_3LA5_001

Geometric discrepancy: 0.21

The information below is about IL_3LA5_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_86319.3

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

269

Unit IDs

4V9B|1|CA|C|985
4V9B|1|CA|A|986
4V9B|1|CA|G|987
*
4V9B|1|CA|C|1218
4V9B|1|CA|U|1219
4V9B|1|CA|G|1220

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CQ

30S RIBOSOMAL PROTEIN S14

Chain CV

30S RIBOSOMAL PROTEIN S19