3D structure

PDB id
4V9B (explore in PDB, NAKB, or RNA 3D Hub)
Description
Crystal Structure of the 70S ribosome with tigecycline.
Experimental method
X-RAY DIFFRACTION
Resolution
3.1 Å

Loop

Sequence
GAUG*CUAAUC
Length
10 nucleotides
Bulged bases
4V9B|1|CA|U|1257, 4V9B|1|CA|A|1280
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
IL_4V9B_237 not in the Motif Atlas
Homologous match to IL_4LFB_052
Geometric discrepancy: 0.1396
The information below is about IL_4LFB_052
Detailed Annotation
180 degree turn
Broad Annotation
No text annotation
Motif group
IL_08849.1
Basepair signature
cWW-L-cWW
Number of instances in this motif group
2

Unit IDs

4V9B|1|CA|G|1255
4V9B|1|CA|A|1256
4V9B|1|CA|U|1257
4V9B|1|CA|G|1258
*
4V9B|1|CA|C|1277
4V9B|1|CA|U|1278
4V9B|1|CA|A|1279
4V9B|1|CA|A|1280
4V9B|1|CA|U|1281
4V9B|1|CA|C|1282

Current chains

Chain CA
16S ribosomal RNA

Nearby chains

Chain CF
30S RIBOSOMAL PROTEIN S3
Chain CM
30S RIBOSOMAL PROTEIN S10
Chain CQ
30S RIBOSOMAL PROTEIN S14

Coloring options:


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