IL_4V9B_252

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CAAGA*UCUUG

Length

10 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAAGA,UCUUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_252 not in the Motif Atlas

Geometric match to IL_5TBW_121

Geometric discrepancy: 0.3568

The information below is about IL_5TBW_121

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_05145.3

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

13

Unit IDs

4V9B|1|DA|C|4
4V9B|1|DA|A|5
4V9B|1|DA|A|6
4V9B|1|DA|G|7
4V9B|1|DA|A|8
*
4V9B|1|DA|U|2895
4V9B|1|DA|C|2896
4V9B|1|DA|U|2897
4V9B|1|DA|U|2898
4V9B|1|DA|G|2899

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DM

50S ribosomal protein L13