IL_4V9B_269
3D structure
- PDB id
- 4V9B (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Crystal Structure of the 70S ribosome with tigecycline.
- Experimental method
- X-RAY DIFFRACTION
- Resolution
- 3.1 Å
Loop
- Sequence
- UUAAG*CGGAG
- Length
- 10 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- IL_4V9B_269 not in the Motif Atlas
- Homologous match to IL_4WF9_019
- Geometric discrepancy: 0.1134
- The information below is about IL_4WF9_019
- Detailed Annotation
- AAA cross-strand stack
- Broad Annotation
- AAA cross-strand stack
- Motif group
- IL_66798.3
- Basepair signature
- cWW-L-R-L-R-tHS-cWW
- Number of instances in this motif group
- 7
Unit IDs
4V9B|1|DA|U|606
4V9B|1|DA|U|607
4V9B|1|DA|A|608
4V9B|1|DA|A|609
4V9B|1|DA|G|609|||A
*
4V9B|1|DA|C|618|||A
4V9B|1|DA|G|619
4V9B|1|DA|G|620
4V9B|1|DA|A|621
4V9B|1|DA|G|622
Current chains
- Chain DA
- 23S ribosomal RNA
Nearby chains
- Chain DF
- 50S ribosomal protein L4
- Chain DO
- 50S ribosomal protein L15
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