IL_4V9B_284

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

AUAG*CUGU

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_284 not in the Motif Atlas

Geometric match to IL_6JDV_002

Geometric discrepancy: 0.2723

The information below is about IL_6JDV_002

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_15225.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

33

Unit IDs

4V9B|1|DA|A|870
4V9B|1|DA|U|871
4V9B|1|DA|A|872
4V9B|1|DA|G|873
*
4V9B|1|DA|C|904
4V9B|1|DA|U|905
4V9B|1|DA|G|906
4V9B|1|DA|U|907

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DP

50S ribosomal protein L16

Chain DV

50S ribosomal protein L25