IL_4V9B_304

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGU*ACC

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: GGU,ACC

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_304 not in the Motif Atlas

Geometric match to IL_4ZC7_001

Geometric discrepancy: 0.2359

The information below is about IL_4ZC7_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V9B|1|DA|G|1413
4V9B|1|DA|G|1414
4V9B|1|DA|U|1415
*
4V9B|1|DA|A|1587
4V9B|1|DA|C|1588
4V9B|1|DA|C|1589

Current chains

Chain DA

23S ribosomal RNA

Nearby chains