IL_4V9B_372

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

GGUCA*UGACC

Length

10 nucleotides

Bulged bases

None detected

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_372 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3852

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9B|1|BA|G|1
4V9B|1|BA|G|2
4V9B|1|BA|U|3
4V9B|1|BA|C|4
4V9B|1|BA|A|5
*
4V9B|1|BA|U|2898
4V9B|1|BA|G|2899
4V9B|1|BA|A|2900
4V9B|1|BA|C|2901
4V9B|1|BA|C|2902

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L13