IL_4V9B_391

3D structure

PDB id

4V9B (explore in PDB, NAKB, or RNA 3D Hub)

Description

Crystal Structure of the 70S ribosome with tigecycline.

Experimental method

X-RAY DIFFRACTION

Resolution

3.1 Å

Loop

Sequence

CGCUGAC*GGUGGAG

Length

14 nucleotides

Bulged bases

4V9B|1|DA|G|932

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9B_391 not in the Motif Atlas

Homologous match to IL_9DFE_024

Geometric discrepancy: 0.1836

The information below is about IL_9DFE_024

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_68243.1

Basepair signature

cWW-L-cWW-cWW-R-L-tHS-cWW

Number of instances in this motif group

1

Unit IDs

4V9B|1|DA|C|844
4V9B|1|DA|G|845
4V9B|1|DA|C|846
4V9B|1|DA|U|847
4V9B|1|DA|G|848
4V9B|1|DA|A|849
4V9B|1|DA|C|850
*
4V9B|1|DA|G|928
4V9B|1|DA|G|929
4V9B|1|DA|U|930
4V9B|1|DA|G|931
4V9B|1|DA|G|932
4V9B|1|DA|A|933
4V9B|1|DA|G|934

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DX

50S ribosomal protein L30