IL_4V9C_025

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUAU*GUAC

Length

8 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_025 not in the Motif Atlas

Geometric match to IL_5C5W_003

Geometric discrepancy: 0.2833

The information below is about IL_5C5W_003

Detailed Annotation

Tandem non-canonical cWW pairs

Broad Annotation

No text annotation

Motif group

IL_54697.1

Basepair signature

cWW-cWW-cWW-cWW

Number of instances in this motif group

52

Unit IDs

4V9C|1|AA|G|406
4V9C|1|AA|U|407
4V9C|1|AA|A|408
4V9C|1|AA|U|409
*
4V9C|1|AA|G|433
4V9C|1|AA|U|434
4V9C|1|AA|A|435
4V9C|1|AA|C|436

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain DA

Large subunit ribosomal RNA; LSU rRNA