IL_4V9C_057

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_057 not in the Motif Atlas

Geometric match to IL_5TBW_079

Geometric discrepancy: 0.2005

The information below is about IL_5TBW_079

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9C|1|AA|U|950
4V9C|1|AA|G|951
4V9C|1|AA|U|952
*
4V9C|1|AA|A|1229
4V9C|1|AA|C|1230
4V9C|1|AA|G|1231

Current chains

Chain AA

16S ribosomal RNA

Nearby chains

Chain AI

30S ribosomal protein S9

Chain AM

30S ribosomal protein S13

Chain AV

Transfer RNA; tRNA