IL_4V9C_103

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCUGAAUC*GUGAG

Length

13 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_103 not in the Motif Atlas

Geometric match to IL_5J7L_253

Geometric discrepancy: 0.3385

The information below is about IL_5J7L_253

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_77870.1

Basepair signature

cWW-L-R-L-tHS-L-cWW-L-cWW

Number of instances in this motif group

2

Unit IDs

4V9C|1|BA|C|274
4V9C|1|BA|C|275
4V9C|1|BA|U|276
4V9C|1|BA|G|277
4V9C|1|BA|A|278
4V9C|1|BA|A|279
4V9C|1|BA|U|280
4V9C|1|BA|C|281
*
4V9C|1|BA|G|359
4V9C|1|BA|U|360
4V9C|1|BA|G|361
4V9C|1|BA|A|362
4V9C|1|BA|G|363

Current chains

Chain BA

23S ribosomal RNA

Nearby chains