IL_4V9C_106

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

ACG*CGU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: ACG,CGU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_106 not in the Motif Atlas

Geometric match to IL_1YZ9_001

Geometric discrepancy: 0.1375

The information below is about IL_1YZ9_001

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9C|1|BA|A|541
4V9C|1|BA|C|542
4V9C|1|BA|G|543
*
4V9C|1|BA|C|550
4V9C|1|BA|G|551
4V9C|1|BA|U|552

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BR

50S ribosomal protein L21