IL_4V9C_127

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGGG*CUUACC

Length

11 nucleotides

Bulged bases

4V9C|1|BA|A|896

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_127 not in the Motif Atlas

Homologous match to IL_5J7L_274

Geometric discrepancy: 0.5659

The information below is about IL_5J7L_274

Detailed Annotation

Double sheared with non-canonical cWW

Broad Annotation

Double sheared

Motif group

IL_17948.2

Basepair signature

cWW-L-R-tSH-tHS-cWW

Number of instances in this motif group

13

Unit IDs

4V9C|1|BA|G|879
4V9C|1|BA|G|880
4V9C|1|BA|G|881
4V9C|1|BA|G|882
4V9C|1|BA|G|883
*
4V9C|1|BA|C|893
4V9C|1|BA|U|894
4V9C|1|BA|U|895
4V9C|1|BA|A|896
4V9C|1|BA|C|897
4V9C|1|BA|C|898

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BM

50S ribosomal protein L16