IL_4V9C_132

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CAU*AUG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CAU,AUG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_132 not in the Motif Atlas

Geometric match to IL_4V88_405

Geometric discrepancy: 0.1428

The information below is about IL_4V88_405

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10167.1

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

48

Unit IDs

4V9C|1|BA|C|1013
4V9C|1|BA|A|1014
4V9C|1|BA|U|1015
*
4V9C|1|BA|A|1147
4V9C|1|BA|U|1148
4V9C|1|BA|G|1149

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain BJ

50S ribosomal protein L13

Chain BQ

50S ribosomal protein L20