IL_4V9C_218

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CCU*AAGG

Length

7 nucleotides

Bulged bases

4V9C|1|BA|A|2800

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_218 not in the Motif Atlas

Geometric match to IL_5VCI_005

Geometric discrepancy: 0.3303

The information below is about IL_5VCI_005

Detailed Annotation

Not an internal loop

Broad Annotation

Not an internal loop

Motif group

IL_64417.2

Basepair signature

cWW-L-cWW

Number of instances in this motif group

18

Unit IDs

4V9C|1|BA|C|2794
4V9C|1|BA|C|2795
4V9C|1|BA|U|2796
*
4V9C|1|BA|A|2799
4V9C|1|BA|A|2800
4V9C|1|BA|G|2801
4V9C|1|BA|G|2802

Current chains

Chain BA

23S ribosomal RNA

Nearby chains