IL_4V9C_239

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGG*CCA

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: UGG,CCA

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_239 not in the Motif Atlas

Geometric match to IL_4KQ0_001

Geometric discrepancy: 0.1858

The information below is about IL_4KQ0_001

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V9C|1|CA|U|140
4V9C|1|CA|G|141
4V9C|1|CA|G|142
*
4V9C|1|CA|C|221
4V9C|1|CA|C|222
4V9C|1|CA|A|223

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CT

30S ribosomal protein S20