IL_4V9C_250

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

UGAAGAAG*UGUAAAG

Length

15 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_250 not in the Motif Atlas

Homologous match to IL_4LFB_017

Geometric discrepancy: 0.1735

The information below is about IL_4LFB_017

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_62329.1

Basepair signature

cWW-tSH-tWH-cWH-L-tHW-tSS-tHH-cWW

Number of instances in this motif group

2

Unit IDs

4V9C|1|CA|U|409
4V9C|1|CA|G|410
4V9C|1|CA|A|411
4V9C|1|CA|A|412
4V9C|1|CA|G|413
4V9C|1|CA|A|414
4V9C|1|CA|A|415
4V9C|1|CA|G|416
*
4V9C|1|CA|U|427
4V9C|1|CA|G|428
4V9C|1|CA|U|429
4V9C|1|CA|A|430
4V9C|1|CA|A|431
4V9C|1|CA|A|432
4V9C|1|CA|G|433

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CD

30S ribosomal protein S4