IL_4V9C_302

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGU*ACG

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: CGU,ACG

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_302 not in the Motif Atlas

Geometric match to IL_5TBW_110

Geometric discrepancy: 0.274

The information below is about IL_5TBW_110

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_44258.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

301

Unit IDs

4V9C|1|CA|C|1352
4V9C|1|CA|G|1353
4V9C|1|CA|U|1354
*
4V9C|1|CA|A|1368
4V9C|1|CA|C|1369
4V9C|1|CA|G|1370

Current chains

Chain CA

16S ribosomal RNA

Nearby chains

Chain CG

30S ribosomal protein S7

Chain CI

30S ribosomal protein S9

Chain CJ

30S ribosomal protein S10

Chain CN

30S ribosomal protein S14