IL_4V9C_330

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

AUA*UAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary: AUA,UAU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_330 not in the Motif Atlas

Geometric match to IL_4V9F_105

Geometric discrepancy: 0.1523

The information below is about IL_4V9F_105

Detailed Annotation

Isolated non-canonical cWW pair

Broad Annotation

No text annotation

Motif group

IL_01003.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

213

Unit IDs

4V9C|1|DA|A|590
4V9C|1|DA|U|591
4V9C|1|DA|A|592
*
4V9C|1|DA|U|665
4V9C|1|DA|A|666
4V9C|1|DA|U|667

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain D3

50S ribosomal protein L35

Chain DE

50S ribosomal protein L4

Chain DL

50S ribosomal protein L15