IL_4V9C_348

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGG*UACC

Length

7 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_348 not in the Motif Atlas

Geometric match to IL_4WF9_003

Geometric discrepancy: 0.39

The information below is about IL_4WF9_003

Detailed Annotation

Minor groove platform with extra cWW

Broad Annotation

Minor groove platform

Motif group

IL_82096.1

Basepair signature

cWW-L-R-L-cWW

Number of instances in this motif group

6

Unit IDs

4V9C|1|DA|G|879
4V9C|1|DA|G|880
4V9C|1|DA|G|881
*
4V9C|1|DA|U|895
4V9C|1|DA|A|896
4V9C|1|DA|C|897
4V9C|1|DA|C|898

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain DM

50S ribosomal protein L16