IL_4V9C_373

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GUC

Length

5 nucleotides

Bulged bases

4V9C|1|DA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_373 not in the Motif Atlas

Geometric match to IL_5J7L_298

Geometric discrepancy: 0.3211

The information below is about IL_5J7L_298

Detailed Annotation

Single bulged U

Broad Annotation

No text annotation

Motif group

IL_89505.4

Basepair signature

cWW-L-cWW

Number of instances in this motif group

117

Unit IDs

4V9C|1|DA|G|1450
4V9C|1|DA|C|1451
*
4V9C|1|DA|G|1459
4V9C|1|DA|U|1460
4V9C|1|DA|C|1461

Current chains

Chain DA

23S ribosomal RNA

Nearby chains