IL_4V9C_393

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GC*GCAC

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_393 not in the Motif Atlas

Homologous match to IL_7RQB_076

Geometric discrepancy: 0.0906

The information below is about IL_7RQB_076

Detailed Annotation

Bulged stacked bases

Broad Annotation

Bulged stacked bases

Motif group

IL_59677.2

Basepair signature

cWW-cWW

Number of instances in this motif group

19

Unit IDs

4V9C|1|DA|G|1933
4V9C|1|DA|C|1934
*
4V9C|1|DA|G|1964
4V9C|1|DA|C|1965
4V9C|1|DA|A|1966
4V9C|1|DA|C|1967

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain CY

Ribosome recycling factor, RRF