IL_4V9C_454

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGAGGC*GCGUAG

Length

12 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_454 not in the Motif Atlas

Geometric match to IL_3LQX_002

Geometric discrepancy: 0.286

The information below is about IL_3LQX_002

Detailed Annotation

tSH-tHW-tHS-cWW

Broad Annotation

No text annotation

Motif group

IL_35186.2

Basepair signature

cWW-tSH-tHW-L-R-cWW-cWW

Number of instances in this motif group

6

Unit IDs

4V9C|1|BA|C|1357
4V9C|1|BA|G|1358
4V9C|1|BA|A|1359
4V9C|1|BA|G|1360
4V9C|1|BA|G|1361
4V9C|1|BA|C|1362
*
4V9C|1|BA|G|1369
4V9C|1|BA|C|1370
4V9C|1|BA|G|1371
4V9C|1|BA|U|1372
4V9C|1|BA|A|1373
4V9C|1|BA|G|1374

Current chains

Chain BA

23S ribosomal RNA

Nearby chains

Chain B2

50S ribosomal protein L34

Chain BC

50S ribosomal protein L2

Chain BX

50S ribosomal protein L28