IL_4V9C_455

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

CGGGC*GUCCCG

Length

11 nucleotides

Bulged bases

4V9C|1|BA|U|1460

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_455 not in the Motif Atlas

Geometric match to IL_8D29_010

Geometric discrepancy: 0.3379

The information below is about IL_8D29_010

Detailed Annotation

Partly complementary

Broad Annotation

Partly complementary

Motif group

IL_71154.2

Basepair signature

cWW-cWW-cWW-cWW-cWW

Number of instances in this motif group

15

Unit IDs

4V9C|1|BA|C|1447
4V9C|1|BA|G|1448
4V9C|1|BA|G|1449
4V9C|1|BA|G|1450
4V9C|1|BA|C|1451
*
4V9C|1|BA|G|1459
4V9C|1|BA|U|1460
4V9C|1|BA|C|1461
4V9C|1|BA|C|1462
4V9C|1|BA|C|1463
4V9C|1|BA|G|1464

Current chains

Chain BA

23S ribosomal RNA

Nearby chains