IL_4V9C_491

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GUUG*UGC

Length

7 nucleotides

Bulged bases

4V9C|1|DA|U|2203

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_491 not in the Motif Atlas

Geometric match to IL_5ML7_010

Geometric discrepancy: 0.3102

The information below is about IL_5ML7_010

Detailed Annotation

Isolated non-canonical cWW with bulges

Broad Annotation

Isolated non-canonical cWW with bulges

Motif group

IL_68118.2

Basepair signature

cWW-cWW-cWW

Number of instances in this motif group

28

Unit IDs

4V9C|1|DA|G|2201
4V9C|1|DA|U|2202
4V9C|1|DA|U|2203
4V9C|1|DA|G|2204
*
4V9C|1|DA|U|2220
4V9C|1|DA|G|2221
4V9C|1|DA|C|2222

Current chains

Chain DA

23S ribosomal RNA

Nearby chains

Chain AD

30S ribosomal protein S4

Chain DC

50S ribosomal protein L2

Chain DX

50S ribosomal protein L28