IL_4V9C_505

3D structure

PDB id

4V9C (explore in PDB, NAKB, or RNA 3D Hub)

Description

Allosteric control of the ribosome by small-molecule antibiotics

Experimental method

X-RAY DIFFRACTION

Resolution

3.3 Å

Loop

Sequence

GGGAGG*CCGACCUUGAAAUACC

Length

22 nucleotides

Bulged bases

4V9C|1|BA|A|2163, 4V9C|1|BA|C|2164, 4V9C|1|BA|U|2172

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9C_505 not in the Motif Atlas

Homologous match to IL_5J7L_390

Geometric discrepancy: 0.4625

The information below is about IL_5J7L_390

Detailed Annotation

Kink-turn

Broad Annotation

No text annotation

Motif group

IL_06029.1

Basepair signature

cWW-L-R-L-R-L-cWW-L-L-R-L-R-L-R-L

Number of instances in this motif group

1

Unit IDs

4V9C|1|BA|G|2123
4V9C|1|BA|G|2124
4V9C|1|BA|G|2125
4V9C|1|BA|A|2126
4V9C|1|BA|G|2127
4V9C|1|BA|G|2128
*
4V9C|1|BA|C|2160
4V9C|1|BA|C|2161
4V9C|1|BA|G|2162
4V9C|1|BA|A|2163
4V9C|1|BA|C|2164
4V9C|1|BA|C|2165
4V9C|1|BA|U|2166
4V9C|1|BA|U|2167
4V9C|1|BA|G|2168
4V9C|1|BA|A|2169
4V9C|1|BA|A|2170
4V9C|1|BA|A|2171
4V9C|1|BA|U|2172
4V9C|1|BA|A|2173
4V9C|1|BA|C|2174
4V9C|1|BA|C|2175

Current chains

Chain BA

23S ribosomal RNA

Nearby chains