Loop IL_4V9C

3D structure

PDB id: 4V9C (explore in PDB, NAKB, or RNA 3D Hub)
Description: Allosteric control of the ribosome by small-molecule antibiotics
Experimental method: X-RAY DIFFRACTION
Resolution: 3.3 Å

Loop

Sequence: CAUUGAGCCUUGAUGUGUAGGAUAGGUG*CACCCUUUAAUGUUUGAUG
Length: 47 nucleotides
Bulged bases: 4V9C|1|DA|U|2111, 4V9C|1|DA|G|2115, 4V9C|1|DA|G|2116, 4V9C|1|DA|A|2117, 4V9C|1|DA|U|2118
QA status: Valid loop

Sequence variability

R3DSVS

Structural variability across Equivalence Class

R3DMCS EC

Structural variability across Rfam

R3DMCS Rfam

Detailed Annotation: No text annotation
Broad Annotation: No text annotation
Motif group: Not in a motif group
Basepair signature: Not available
Number of instances in this motif group: 0

Unit IDs

4V9C|1|DA|C|2096
4V9C|1|DA|A|2097
4V9C|1|DA|U|2098
4V9C|1|DA|U|2099
4V9C|1|DA|G|2100
4V9C|1|DA|A|2101
4V9C|1|DA|G|2102
4V9C|1|DA|C|2103
4V9C|1|DA|C|2104
4V9C|1|DA|U|2105
4V9C|1|DA|U|2106
4V9C|1|DA|G|2107
4V9C|1|DA|A|2108
4V9C|1|DA|U|2109
4V9C|1|DA|G|2110
4V9C|1|DA|U|2111
4V9C|1|DA|G|2112
4V9C|1|DA|U|2113
4V9C|1|DA|A|2114
4V9C|1|DA|G|2115
4V9C|1|DA|G|2116
4V9C|1|DA|A|2117
4V9C|1|DA|U|2118
4V9C|1|DA|A|2119
4V9C|1|DA|G|2120
4V9C|1|DA|G|2121
4V9C|1|DA|U|2122
4V9C|1|DA|G|2123
*
4V9C|1|DA|C|2175
4V9C|1|DA|A|2176
4V9C|1|DA|C|2177
4V9C|1|DA|C|2178
4V9C|1|DA|C|2179
4V9C|1|DA|U|2180
4V9C|1|DA|U|2181
4V9C|1|DA|U|2182
4V9C|1|DA|A|2183
4V9C|1|DA|A|2184
4V9C|1|DA|U|2185
4V9C|1|DA|G|2186
4V9C|1|DA|U|2187
4V9C|1|DA|U|2188
4V9C|1|DA|U|2189
4V9C|1|DA|G|2190
4V9C|1|DA|A|2191
4V9C|1|DA|U|2192
4V9C|1|DA|G|2193

Current chains

Chain DA: 23S ribosomal RNA

Nearby chains

Chain AA: Small subunit ribosomal RNA; SSU rRNA
Chain CG: 30S ribosomal protein S7
Chain DH: 50S ribosomal protein L9

IL_4V9C_521