IL_4V9D_041

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GGAGUACG*UAAAAC

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_041 not in the Motif Atlas

Homologous match to IL_5J7L_038

Geometric discrepancy: 0.0834

The information below is about IL_5J7L_038

Detailed Annotation

8x6 Sarcin-Ricin with inserted Y; G-bulge

Broad Annotation

Sarcin-Ricin; G-bulge

Motif group

IL_41756.4

Basepair signature

cWW-tSH-tHH-cSH-tWH-tHS-cWW-L

Number of instances in this motif group

4

Unit IDs

4V9D|1|AA|G|887
4V9D|1|AA|G|888
4V9D|1|AA|A|889
4V9D|1|AA|G|890
4V9D|1|AA|U|891
4V9D|1|AA|A|892
4V9D|1|AA|C|893
4V9D|1|AA|G|894
*
4V9D|1|AA|U|905
4V9D|1|AA|A|906
4V9D|1|AA|A|907
4V9D|1|AA|A|908
4V9D|1|AA|A|909
4V9D|1|AA|C|910

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AL

30S ribosomal protein S12