IL_4V9D_044

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GCAC*GUUCCC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_044 not in the Motif Atlas

Homologous match to IL_6CZR_149

Geometric discrepancy: 0.1465

The information below is about IL_6CZR_149

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

IL_93211.1

Basepair signature

cWW-cWS-cWW-L-R-cWW-L

Number of instances in this motif group

2

Unit IDs

4V9D|1|AA|G|933
4V9D|1|AA|C|934
4V9D|1|AA|A|935
4V9D|1|AA|C|936
*
4V9D|1|AA|G|1379
4V9D|1|AA|U|1380
4V9D|1|AA|U|1381
4V9D|1|AA|C|1382
4V9D|1|AA|C|1383
4V9D|1|AA|C|1384

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AG

30S ribosomal protein S7

Chain AI

30S ribosomal protein S9

Chain AV

Transfer RNA; tRNA