IL_4V9D_050

3D structure

PDB id

4V9D (explore in PDB, NAKB, or RNA 3D Hub)

Description

Structures of the bacterial ribosome in classical and hybrid states of tRNA binding

Experimental method

X-RAY DIFFRACTION

Resolution

3 Å

Loop

Sequence

GUU*AAU

Length

6 nucleotides

Bulged bases

None detected

QA status

Self-complementary:

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

IL_4V9D_050 not in the Motif Atlas

Geometric match to IL_3R1D_002

Geometric discrepancy: 0.1998

The information below is about IL_3R1D_002

Detailed Annotation

Isolated cWH basepair

Broad Annotation

No text annotation

Motif group

IL_10892.2

Basepair signature

cWW-cHW-cWW

Number of instances in this motif group

58

Unit IDs

4V9D|1|AA|G|1006
4V9D|1|AA|U|1007
4V9D|1|AA|U|1008
*
4V9D|1|AA|A|1021
4V9D|1|AA|A|1022
4V9D|1|AA|U|1023

Current chains

Chain AA

16S rRNA

Nearby chains

Chain AN

30S ribosomal protein S14